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Chapter 3 Peak Detection and Labeling
3-72 Applied Biosystems
3
The following table lists the default settings in the .SET files
provided for spectra.
Parameter
Mariner
Spectrum
MARINER.S
ET
Voyager Spectrum
Linear
VOYAGER
LINEAR.SET
Reflector
VOYAGER
REFLECTOR
.SET
PSD
VOYAGER
PSD.SET
Basic Settings (spectrum data)
%Base Peak Intensity 0.25 0 0 0
%Max Peak Area 0.25 2 2 2
Use Resolution Dependent
Settings
ON ON ON OFF
Mass Resolution 5,000 2,000 10,000 N/A
Peak Processing
Integration Baseline Setting V-to-V V-to-B V-to-B V-to-B
Centroid% 50505050
Max. Charge State 6 1 1 1
Max. Isotopes# 6 5 10 5
Min. Intensity% 5 10 10 10
Max. Intensity% 100 100 100 100