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Software User’s Guide v
Chapter 3 Peak Detection and Labeling
3.1 Overview .............................................................................. 3-2
3.1.1 Default Peak Detection .......................................................... 3-2
3.1.2 The Resolution-Based Peak Detection Routine ...................... 3-3
3.2 Peak Detection
....................................................................... 3-6
3.2.1 Strategy for Mariner Peak Detection ....................................... 3-6
3.2.2 Strategy for Voyager Peak Detection ...................................... 3-8
3.2.3 Setting Peak Detection Parameters ......................................3-11
3.2.4 Peak Detection Parameter Descriptions ................................3-19
3.2.5 Charge State
Determination and Examples ................................................3-32
3.3 Peak List
............................................................................. 3-37
3.3.1 Displaying the Peak List ........................................................3-37
3.3.2 Inserting Peaks in the Peak List ............................................3-39
3.3.3 Saving the Peak List .............................................................3-40
3.3.4 Sorting, Filtering, and Printing the Peak List .........................3-42
3.4 Deisotoping a Spectrum
.......................................................... 3-45
3.5 Peak Labeling
....................................................................... 3-52
3.5.1 Charge State Labels .............................................................3-53
3.5.2 Setting Chromatogram and Spectrum Peak Labels ...............3-54
3.5.3 Setting Custom Peak Labels .................................................3-61
3.6 Process that Occurs During Peak Detection,
Centroiding, and Integration
..................................................... 3-67
3.7 Default Peak Detection Settings
................................................ 3-71