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Using the Peptide Fragmentation Toolbox
Data Explorer
™
Software User’s Guide C-9
C
C.5 Using the Peptide
Fragmentation Toolbox
Use the Peptide Fragmentation toolbox when examining
Voyager composite PSD spectra or Mariner in-source CID
spectra to label immonium ions, identify fragment ion pairs,
view sequences based on different reference peaks, and
determine if a selected peak is of a specific fragment ion
category.
Setup To enter Setup parameters for the Peptide Fragmentation
Toolbox macro:
1. In the Toolbox Palette dialog box, click Peptide
Fragmentation Toolbox.
Figure 3-10 Peptide FragmentationSetup
2. In the Setup tab, click Get Spec Peak List.